=>> Building biology/ncbi-blast+ build started at Fri Apr 12 00:38:08 UTC 2019 port directory: /usr/ports/biology/ncbi-blast+ package name: ncbi-blast+-2.8.1_2 building for: FreeBSD ppcports 13.0-CURRENT FreeBSD 13.0-CURRENT 1300013 powerpc maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 492534 2019-02-09 23:25:36Z sunpoet $ Poudriere version: 3.2.8 Host OSVERSION: 1300012 Jail OSVERSION: 1300013 Job Id: 11 !!! Jail is newer than host. (Jail: 1300013, Host: 1300012) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300013 UNAME_v=FreeBSD 13.0-CURRENT 1300013 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root TRYBROKEN=yes LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/zfs/poudriere/data/.m/head-head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 UID=0 PWD=/zfs/poudriere/data/.m/head-head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/zfs/poudriere/data/.m/head-head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd13 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300013 PYTHONBASE=/usr/local _SMP_CPUS=80 CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PD accepted by the user =========================================================================== =================================================== ===> ncbi-blast+-2.8.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [ppcports] Installing pkg-1.10.5_5... [ppcports] Extracting pkg-1.10.5_5: .......... done ===> ncbi-blast+-2.8.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.8.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user => ncbi-blast-2.8.1+-src.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.8.1+-src.tar.gz fetch: https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.8.1+-src.tar.gz: Not Found => Attempting to fetch https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.8.1/ncbi-blast-2.8.1+-src.tar.gz ncbi-blast-2.8.1+-src.tar.gz 23 MB 2088 kBps 12s ===> Fetching all distfiles required by ncbi-blast+-2.8.1_2 for building =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.8.1_2 for building => SHA256 Checksum OK for ncbi-blast-2.8.1+-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.8.1_2 for building ===> Extracting for ncbi-blast+-2.8.1_2 => SHA256 Checksum OK for ncbi-blast-2.8.1+-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ncbi-blast+-2.8.1_2 ===> Applying FreeBSD patches for ncbi-blast+-2.8.1_2 =========================================================================== =================================================== ===> ncbi-blast+-2.8.1_2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [ppcports] Installing gmake-4.2.1_3... [ppcports] `-- Installing gettext-runtime-0.19.8.1_2... [ppcports] | `-- Installing indexinfo-0.3.1... [ppcports] | `-- Extracting indexinfo-0.3.1: .... done [ppcports] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [ppcports] Extracting gmake-4.2.1_3: .......... done ===> ncbi-blast+-2.8.1_2 depends on executable: gmake - found ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.16.txz [ppcports] Installing python27-2.7.16... [ppcports] `-- Installing libffi-3.2.1_3... [ppcports] `-- Extracting libffi-3.2.1_3: .......... done [ppcports] `-- Installing readline-7.0.5... [ppcports] `-- Extracting readline-7.0.5: .......... done [ppcports] Extracting python27-2.7.16: .....make: Working in: /usr/ports/biology/ncbi-blast+ ..... done Message from python27-2.7.16: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> ncbi-blast+-2.8.1_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on package: perl5>=5.28.r1<5.29 - not found ===> Installing existing package /packages/All/perl5-5.28.1_1.txz [ppcports] Installing perl5-5.28.1_1... [ppcports] Extracting perl5-5.28.1_1: ..make: Working in: /usr/ports/biology/ncbi-blast+ .make: Working in: /usr/ports/biology/ncbi-blast+ ....... done make: Working in: /usr/ports/biology/ncbi-blast+ Message from perl5-5.28.1_1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> ncbi-blast+-2.8.1_2 depends on package: perl5>=5.28.r1<5.29 - found ===> Returning to build of ncbi-blast+-2.8.1_2 =========================================================================== =================================================== ===> ncbi-blast+-2.8.1_2 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.43.txz [ppcports] Installing pcre-8.43... [ppcports] `-- Installing gcc8-8.3.0_1... [ppcports] | `-- Installing binutils-2.32,1... [ppcports] | `-- Extracting binutils-2.32,1: make: Working in: /usr/ports/biology/ncbi-blast+ .......... done [ppcports] | `-- Installing gmp-6.1.2_1... [ppcports] | `-- Extracting gmp-6.1.2_1: .......... done [ppcports] | `-- Installing mpc-1.1.0_2... [ppcports] | | `-- Installing mpfr-4.0.2... [ppcports] | | `-- Extracting mpfr-4.0.2: .......... done [ppcports] | `-- Extracting mpc-1.1.0_2: ......... done [ppcports] `-- Extracting gcc8-8.3.0_1: .......... done make: Working in: /usr/ports/biology/ncbi-blast+ [ppcports] Extracting pcre-8.43: .......... done Message from gcc8-8.3.0_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> ncbi-blast+-2.8.1_2 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on shared library: liblmdb.so - not found ===> Installing existing package /packages/All/lmdb-0.9.23,1.txz [ppcports] Installing lmdb-0.9.23,1... [ppcports] Extracting lmdb-0.9.23,1: .......... done ===> ncbi-blast+-2.8.1_2 depends on shared library: liblmdb.so - found (/usr/local/lib/liblmdb.so) ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on shared library: liblzo2.so - not found ===> Installing existing package /packages/All/lzo2-2.10_1.txz [ppcports] Installing lzo2-2.10_1... [ppcports] Extracting lzo2-2.10_1: .......... done ===> ncbi-blast+-2.8.1_2 depends on shared library: liblzo2.so - found (/usr/local/lib/liblzo2.so) ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on shared library: libgnutls.so - not found ===> Installing existing package /packages/All/gnutls-3.6.6_2.txz [ppcports] Installing gnutls-3.6.6_2... [ppcports] `-- Installing ca_root_nss-3.43... [ppcports] `-- Extracting ca_root_nss-3.43: ........ done [ppcports] `-- Installing libidn2-2.1.1... [ppcports] | `-- Installing libunistring-0.9.10_1... [ppcports] | `-- Extracting libunistring-0.9.10_1: .......... done [ppcports] `-- Extracting libidn2-2.1.1: .......... done [ppcports] `-- Installing libtasn1-4.13_1... [ppcports] `-- Extracting libtasn1-4.13_1: .......... done [ppcports] `-- Installing nettle-3.4.1_1... [ppcports] `-- Extracting nettle-3.4.1_1: .......... done [ppcports] `-- Installing p11-kit-0.23.15... [ppcports] `-- Extracting p11-kit-0.23.15: .......... done [ppcports] `-- Installing trousers-0.3.14_2... [ppcports] | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. [ppcports] | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. [ppcports] `-- Extracting trousers-0.3.14_2: .......... done [ppcports] Extracting gnutls-3.6.6_2: .......... done make: Working in: /usr/ports/biology/ncbi-blast+ Message from ca_root_nss-3.43: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> ncbi-blast+-2.8.1_2 depends on shared library: libgnutls.so - found (/usr/local/lib/libgnutls.so) ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on shared library: libtspi.so - found (/usr/local/lib/libtspi.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libidn2.so - found (/usr/local/lib/libidn2.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libnettle.so - found (/usr/local/lib/libnettle.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libhogweed.so - found (/usr/local/lib/libhogweed.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libtasn1.so - found (/usr/local/lib/libtasn1.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libp11-kit.so - found (/usr/local/lib/libp11-kit.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libgcrypt.so - not found ===> Installing existing package /packages/All/libgcrypt-1.8.4_1.txz [ppcports] Installing libgcrypt-1.8.4_1... [ppcports] `-- Installing libgpg-error-1.36... [ppcports] `-- Extracting libgpg-error-1.36: .......... done [ppcports] Extracting libgcrypt-1.8.4_1: .......... done ===> ncbi-blast+-2.8.1_2 depends on shared library: libgcrypt.so - found (/usr/local/lib/libgcrypt.so) ===> Returning to build of ncbi-blast+-2.8.1_2 ===> ncbi-blast+-2.8.1_2 depends on shared library: libgpg-error.so - found (/usr/local/lib/libgpg-error.so) ===> ncbi-blast+-2.8.1_2 depends on shared library: libsqlite3.so - not found ===> Installing existing package /packages/All/sqlite3-3.27.1_1.txz [ppcports] Installing sqlite3-3.27.1_1... [ppcports] Extracting sqlite3-3.27.1_1: ....make: Working in: /usr/ports/biology/ncbi-blast+ ...... done ===> ncbi-blast+-2.8.1_2 depends on shared library: libsqlite3.so - found (/usr/local/lib/libsqlite3.so) ===> Returning to build of ncbi-blast+-2.8.1_2 =========================================================================== =================================================== ===> Configuring for ncbi-blast+-2.8.1_2 make: Working in: /usr/ports/biology/ncbi-blast+ configure: loading site script /usr/ports/Templates/config.site configure: creating cache config.cache checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... powerpc64-portbld-freebsd13.0 checking host system type... powerpc64-portbld-freebsd13.0 checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... cc checking for C compiler default output file name... make: Working in: /usr/ports/biology/ncbi-blast+ a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes adjusted C compiler: /usr/bin/cc adjusted C++ compiler: /usr/bin/c++ checking whether /usr/bin/cc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/cc supports -Wl,--{en,dis}able-new-dtags... yes checking whether /usr/bin/cc has an option to discard unneeded shared libraries... -Wl,--as-needed checking whether /usr/bin/cc has an option to link in whole static archives... -Wl,--whole-archive checking whether _LIBCPP_VERSION is declared... make: Working in: /usr/ports/biology/ncbi-blast+ no checking how to enable C++ '11 features in /usr/bin/c++ ... no configure: error: Please upgrade to a compiler supporting C++ '11, such as GCC 4.8 or newer. ===> Script "configure" failed unexpectedly. Please report the problem to jwb@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.8.1+-src/c++/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-blast+ =>> Cleaning up wrkdir ===> Cleaning for ncbi-blast+-2.8.1_2 build of biology/ncbi-blast+ | ncbi-blast+-2.8.1_2 ended at Fri Apr 12 01:04:45 UTC 2019 build time: 00:26:40 !!! build failure encountered !!!