=>> Building biology/gmap build started at Fri Apr 12 02:06:40 UTC 2019 port directory: /usr/ports/biology/gmap package name: gmap-2015.09.21 building for: FreeBSD ppcports 13.0-CURRENT FreeBSD 13.0-CURRENT 1300013 powerpc maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/gmap/Makefile 460452 2018-01-31 01:07:07Z jwb $ Poudriere version: 3.2.8 Host OSVERSION: 1300012 Jail OSVERSION: 1300013 Job Id: 80 !!! Jail is newer than host. (Jail: 1300013, Host: 1300012) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300013 UNAME_v=FreeBSD 13.0-CURRENT 1300013 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root TRYBROKEN=yes LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/zfs/poudriere/data/.m/head-head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 UID=0 PWD=/zfs/poudriere/data/.m/head-head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/zfs/poudriere/data/.m/head-head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gmap-2015.09.21: SIMD=off: Use CPU-specific optimizations ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-builtin-popcount --disable-simd --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gmap/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gmap/work HOME=/wrkdirs/usr/ports/biology/gmap/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gmap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gmap/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gmap/work HOME=/wrkdirs/usr/ports/biology/gmap/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gmap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/gmap" EXAMPLESDIR="share/examples/gmap" DATADIR="share/gmap" WWWDIR="www/gmap" ETCDIR="etc/gmap" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gmap DOCSDIR=/usr/local/share/doc/gmap EXAMPLESDIR=/usr/local/share/examples/gmap WWWDIR=/usr/local/www/gmap ETCDIR=/usr/local/etc/gmap --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300013 PYTHONBASE=/usr/local _SMP_CPUS=80 CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GMAP accepted by the user =========================================================================== =================================================== ===> gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [ppcports] Installing pkg-1.10.5_5... [ppcports] Extracting pkg-1.10.5_5: .......... done ===> gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gmap-2015.09.21 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GMAP accepted by the user => gmap-gsnap-2015-09-21.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch http://research-pub.gene.com/gmap/src/gmap-gsnap-2015-09-21.tar.gz gmap-gsnap-2015-09-21.tar.gz 4070 kB 1801 kBps 03s ===> Fetching all distfiles required by gmap-2015.09.21 for building =========================================================================== =================================================== ===> License GMAP accepted by the user ===> Fetching all distfiles required by gmap-2015.09.21 for building => SHA256 Checksum OK for gmap-gsnap-2015-09-21.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GMAP accepted by the user ===> Fetching all distfiles required by gmap-2015.09.21 for building ===> Extracting for gmap-2015.09.21 => SHA256 Checksum OK for gmap-gsnap-2015-09-21.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for gmap-2015.09.21 =========================================================================== =================================================== ===> gmap-2015.09.21 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [ppcports] Installing gmake-4.2.1_3... [ppcports] `-- Installing gettext-runtime-0.19.8.1_2... [ppcports] | `-- Installing indexinfo-0.3.1... [ppcports] | `-- Extracting indexinfo-0.3.1: .... done [ppcports] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [ppcports] Extracting gmake-4.2.1_3: .......... done ===> gmap-2015.09.21 depends on executable: gmake - found ===> Returning to build of gmap-2015.09.21 ===> gmap-2015.09.21 depends on package: perl5>=5.28.r1<5.29 - not found ===> Installing existing package /packages/All/perl5-5.28.1_1.txz [ppcports] Installing perl5-5.28.1_1... [ppcports] Extracting perl5-5.28.1_1: .......... done Message from perl5-5.28.1_1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> gmap-2015.09.21 depends on package: perl5>=5.28.r1<5.29 - found ===> Returning to build of gmap-2015.09.21 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for gmap-2015.09.21 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/config/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/configure configure: loading site script /usr/ports/Templates/config.site checking package version... 2015-09-21 really loading site script /usr/ports/Templates/config.site: file was found checking CFLAGS... -O2 -pipe -fno-strict-aliasing checking MPI_CFLAGS... checking build system type... powerpc64-portbld-freebsd13.0 checking host system type... powerpc64-portbld-freebsd13.0 checking target system type... powerpc64-portbld-freebsd13.0 checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking bindir... /usr/local/bin checking for a working version of perl... /usr/local/bin/perl checking for gcc... (cached) cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking whether cc understands -c and -o together... yes checking for mpicc... no checking for hcc... no checking for mpxlc_r... no checking for mpxlc... no checking for mpcc... no checking for cmpicc... no checking for cc... /usr/bin/cc checking for MPI_Init... no checking for MPI_Init in -lmpi... no checking for MPI_Init in -lmpich... no checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from cc object... ok checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd13.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for rint in -lm... yes checking whether to use MPI_File for input... not specified so enabled by default checking for pthreads feature... not specified so enabled by default checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking for cc_r... cc checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for fcntl.h... (cached) yes checking for limits.h... (cached) yes checking for stddef.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking whether byte ordering is bigendian... yes checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for size_t... (cached) yes checking for off_t... (cached) yes checking for caddr_t... yes checking size of unsigned long... 8 checking size of unsigned long long... 8 checking size of off_t... 8 checking for _LARGEFILE_SOURCE value needed for large files... no checking whether alloca is enabled... not specified so enabled by default checking for working alloca.h... no checking for alloca... yes checking whether mmap is enabled... not specified so enabled by default checking for working mmap with MAP_FIXED... yes checking for working mmap with MAP_VARIABLE... no checking for MAP_FILE in mmap... yes checking for MAP_VARIABLE in mmap... no checking for MAP_SHARED in mmap... yes checking for MAP_PRIVATE in mmap... yes checking for MAP_FAILED in mmap... yes checking for MADV_DONTNEED in madvise... yes checking for MADV_WILLNEED in madvise... yes checking for MADV_RANDOM in madvise... yes checking for MADV_SEQUENTIAL in madvise... yes checking for SHM_NORESERVE in shmget... no checking for ceil... yes checking for floor... yes checking for index... (cached) yes checking for log... yes checking for madvise... yes checking for memcpy... (cached) yes checking for memmove... (cached) yes checking for memset... (cached) yes checking for munmap... (cached) yes checking for pow... yes checking for rint... yes checking for stat64... no checking for strtoul... (cached) yes checking for sysconf... (cached) yes checking for sysctl... (cached) yes checking for sigaction... (cached) yes checking for shmget... (cached) yes checking for shmctl... yes checking for shmat... yes checking for shmdt... yes checking for semget... yes checking for semctl... yes checking for semop... yes checking for struct stat64... no checking for pagesize via sysconf... yes checking for pagesize via sysctl... no checking whether fopen accepts "b" mode... yes checking whether fopen accepts "t" mode... yes checking for builtin popcount/clz/ctz features... disabled checking for bsr instruction in assembly... yes checking whether sse2 is enabled... not specified so enabled by default checking compiler is defective and requires an immediate in sse2 shift commands... yes checking whether ssse3 is enabled... not specified so enabled by default checking whether sse4.1 is enabled... not specified so enabled by default checking whether sse4.2 is enabled... not specified so enabled by default checking whether avx is enabled... not specified so enabled by default checking whether avx2 is enabled... not specified so enabled by default checking whether simd is enabled... disabled checking gmapdb... /usr/local/share checking MAX_READLENGTH... 300 checking for zlib support... enabled checking for zlib.h... (cached) yes checking for gzopen in -lz... yes checking for gzeof in -lz... yes checking for gzgetc in -lz... yes checking for gzgets in -lz... yes checking for gzclose in -lz... yes checking if zlib package is complete... working checking for gzbuffer in -lz... yes checking for bzlib support... enabled checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzReadOpen in -lbz2... yes checking for BZ2_bzRead in -lbz2... yes checking for BZ2_bzReadClose in -lbz2... yes checking if bzlib package is complete... working configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating mpi/Makefile config.status: creating util/Makefile config.status: creating util/gmap_compress.pl config.status: creating util/gmap_uncompress.pl config.status: creating util/gmap_process.pl config.status: creating util/gmap_build.pl config.status: creating util/gmap_reassemble.pl config.status: creating util/md_coords.pl config.status: creating util/fa_coords.pl config.status: creating util/psl_splicesites.pl config.status: creating util/psl_introns.pl config.status: creating util/psl_genes.pl config.status: creating util/ensembl_genes.pl config.status: creating util/gtf_splicesites.pl config.status: creating util/gtf_introns.pl config.status: creating util/gtf_genes.pl config.status: creating util/gff3_splicesites.pl config.status: creating util/gff3_introns.pl config.status: creating util/gff3_genes.pl config.status: creating util/dbsnp_iit.pl config.status: creating util/gvf_iit.pl config.status: creating util/vcf_iit.pl config.status: creating tests/Makefile config.status: creating tests/align.test config.status: creating tests/coords1.test config.status: creating tests/setup1.test config.status: creating tests/iit.test config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: WARNING: Your C compiler does not know how to handle a particular form of the SSE2 shift commands, and must be somewhat old (probably gcc 4.1 or gcc 4.2). The configure script has therefore substituted alternate C code that your compiler can handle. However, for optimal performance, you may want to obtain a more recent C compiler and build the code with that. checking Standard compiler and flags to be used... cc -O2 -pipe -fno-strict-aliasing checking Standard linker flags to be used... checking MPI compiler and flags to be used... /usr/bin/cc checking MPI linker flags to be used... checking pthread compiler flags to be used... -D_THREAD_SAFE -pthread checking popcnt compiler flags to be used... checking SIMD features available on computer... checking SIMD compiler flags to be used... /usr/bin/sed -i.bak -e 's|/usr/bin/perl|/usr/local/bin/perl|g' /wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/Makefile /wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/util/*.pl =========================================================================== =================================================== ===> Building for gmap-2015.09.21 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21' Making all in src gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src' gmake all-am gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src' cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-except.o -MD -MP -MF .deps/gmap-except.Tpo -c -o gmap-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmap-except.Tpo .deps/gmap-except.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-assert.o -MD -MP -MF .deps/gmap-assert.Tpo -c -o gmap-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmap-assert.Tpo .deps/gmap-assert.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-mem.o -MD -MP -MF .deps/gmap-mem.Tpo -c -o gmap-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gmap-mem.Tpo .deps/gmap-mem.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-intlist.o -MD -MP -MF .deps/gmap-intlist.Tpo -c -o gmap-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmap-intlist.Tpo .deps/gmap-intlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-list.o -MD -MP -MF .deps/gmap-list.Tpo -c -o gmap-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmap-list.Tpo .deps/gmap-list.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-littleendian.o -MD -MP -MF .deps/gmap-littleendian.Tpo -c -o gmap-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmap-littleendian.Tpo .deps/gmap-littleendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-bigendian.o -MD -MP -MF .deps/gmap-bigendian.Tpo -c -o gmap-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmap-bigendian.Tpo .deps/gmap-bigendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-univinterval.o -MD -MP -MF .deps/gmap-univinterval.Tpo -c -o gmap-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmap-univinterval.Tpo .deps/gmap-univinterval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-interval.o -MD -MP -MF .deps/gmap-interval.Tpo -c -o gmap-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmap-interval.Tpo .deps/gmap-interval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-uintlist.o -MD -MP -MF .deps/gmap-uintlist.Tpo -c -o gmap-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmap-uintlist.Tpo .deps/gmap-uintlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-stopwatch.o -MD -MP -MF .deps/gmap-stopwatch.Tpo -c -o gmap-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmap-stopwatch.Tpo .deps/gmap-stopwatch.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-access.o -MD -MP -MF .deps/gmap-access.Tpo -c -o gmap-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmap-access.Tpo .deps/gmap-access.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-filestring.o -MD -MP -MF .deps/gmap-filestring.Tpo -c -o gmap-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmap-filestring.Tpo .deps/gmap-filestring.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-iit-read-univ.o -MD -MP -MF .deps/gmap-iit-read-univ.Tpo -c -o gmap-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmap-iit-read-univ.Tpo .deps/gmap-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-iit-read.o -MD -MP -MF .deps/gmap-iit-read.Tpo -c -o gmap-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmap-iit-read.Tpo .deps/gmap-iit-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-md5.o -MD -MP -MF .deps/gmap-md5.Tpo -c -o gmap-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmap-md5.Tpo .deps/gmap-md5.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-bzip2.o -MD -MP -MF .deps/gmap-bzip2.Tpo -c -o gmap-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmap-bzip2.Tpo .deps/gmap-bzip2.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-sequence.o -MD -MP -MF .deps/gmap-sequence.Tpo -c -o gmap-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmap-sequence.Tpo .deps/gmap-sequence.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-reader.o -MD -MP -MF .deps/gmap-reader.Tpo -c -o gmap-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gmap-reader.Tpo .deps/gmap-reader.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-genomicpos.o -MD -MP -MF .deps/gmap-genomicpos.Tpo -c -o gmap-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmap-genomicpos.Tpo .deps/gmap-genomicpos.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-compress.o -MD -MP -MF .deps/gmap-compress.Tpo -c -o gmap-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmap-compress.Tpo .deps/gmap-compress.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-compress-write.o -MD -MP -MF .deps/gmap-compress-write.Tpo -c -o gmap-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmap-compress-write.Tpo .deps/gmap-compress-write.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-gbuffer.o -MD -MP -MF .deps/gmap-gbuffer.Tpo -c -o gmap-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gmap-gbuffer.Tpo .deps/gmap-gbuffer.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-genome.o -MD -MP -MF .deps/gmap-genome.Tpo -c -o gmap-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmap-genome.Tpo .deps/gmap-genome.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-popcount.o -MD -MP -MF .deps/gmap-popcount.Tpo -c -o gmap-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmap-popcount.Tpo .deps/gmap-popcount.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-genome128_hr.o -MD -MP -MF .deps/gmap-genome128_hr.Tpo -c -o gmap-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmap-genome128_hr.Tpo .deps/gmap-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-genome_sites.o -MD -MP -MF .deps/gmap-genome_sites.Tpo -c -o gmap-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gmap-genome_sites.Tpo .deps/gmap-genome_sites.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-genome-write.o -MD -MP -MF .deps/gmap-genome-write.Tpo -c -o gmap-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c genome-write.c: In function 'genome_writeraw_file': genome-write.c:567: warning: comparison is always true due to limited range of data type mv -f .deps/gmap-genome-write.Tpo .deps/gmap-genome-write.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-bitpack64-read.o -MD -MP -MF .deps/gmap-bitpack64-read.Tpo -c -o gmap-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmap-bitpack64-read.Tpo .deps/gmap-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-bitpack64-readtwo.o -MD -MP -MF .deps/gmap-bitpack64-readtwo.Tpo -c -o gmap-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmap-bitpack64-readtwo.Tpo .deps/gmap-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-indexdb.o -MD -MP -MF .deps/gmap-indexdb.Tpo -c -o gmap-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmap-indexdb.Tpo .deps/gmap-indexdb.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-indexdb_hr.o -MD -MP -MF .deps/gmap-indexdb_hr.Tpo -c -o gmap-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/gmap-indexdb_hr.Tpo .deps/gmap-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-oligo.o -MD -MP -MF .deps/gmap-oligo.Tpo -c -o gmap-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gmap-oligo.Tpo .deps/gmap-oligo.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-block.o -MD -MP -MF .deps/gmap-block.Tpo -c -o gmap-block.o `test -f 'block.c' || echo './'`block.c mv -f .deps/gmap-block.Tpo .deps/gmap-block.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-chrom.o -MD -MP -MF .deps/gmap-chrom.Tpo -c -o gmap-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmap-chrom.Tpo .deps/gmap-chrom.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-segmentpos.o -MD -MP -MF .deps/gmap-segmentpos.Tpo -c -o gmap-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gmap-segmentpos.Tpo .deps/gmap-segmentpos.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-chrnum.o -MD -MP -MF .deps/gmap-chrnum.Tpo -c -o gmap-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gmap-chrnum.Tpo .deps/gmap-chrnum.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-uinttable.o -MD -MP -MF .deps/gmap-uinttable.Tpo -c -o gmap-uinttable.o `test -f 'uinttable.c' || echo './'`uinttable.c mv -f .deps/gmap-uinttable.Tpo .deps/gmap-uinttable.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-gregion.o -MD -MP -MF .deps/gmap-gregion.Tpo -c -o gmap-gregion.o `test -f 'gregion.c' || echo './'`gregion.c mv -f .deps/gmap-gregion.Tpo .deps/gmap-gregion.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-match.o -MD -MP -MF .deps/gmap-match.Tpo -c -o gmap-match.o `test -f 'match.c' || echo './'`match.c mv -f .deps/gmap-match.Tpo .deps/gmap-match.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-matchpool.o -MD -MP -MF .deps/gmap-matchpool.Tpo -c -o gmap-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c mv -f .deps/gmap-matchpool.Tpo .deps/gmap-matchpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-diagnostic.o -MD -MP -MF .deps/gmap-diagnostic.Tpo -c -o gmap-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c mv -f .deps/gmap-diagnostic.Tpo .deps/gmap-diagnostic.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-stage1.o -MD -MP -MF .deps/gmap-stage1.Tpo -c -o gmap-stage1.o `test -f 'stage1.c' || echo './'`stage1.c mv -f .deps/gmap-stage1.Tpo .deps/gmap-stage1.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-diag.o -MD -MP -MF .deps/gmap-diag.Tpo -c -o gmap-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gmap-diag.Tpo .deps/gmap-diag.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-diagpool.o -MD -MP -MF .deps/gmap-diagpool.Tpo -c -o gmap-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gmap-diagpool.Tpo .deps/gmap-diagpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-cmet.o -MD -MP -MF .deps/gmap-cmet.Tpo -c -o gmap-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gmap-cmet.Tpo .deps/gmap-cmet.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-atoi.o -MD -MP -MF .deps/gmap-atoi.Tpo -c -o gmap-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gmap-atoi.Tpo .deps/gmap-atoi.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-orderstat.o -MD -MP -MF .deps/gmap-orderstat.Tpo -c -o gmap-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gmap-orderstat.Tpo .deps/gmap-orderstat.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-oligoindex_hr.o -MD -MP -MF .deps/gmap-oligoindex_hr.Tpo -c -o gmap-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gmap-oligoindex_hr.Tpo .deps/gmap-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-intron.o -MD -MP -MF .deps/gmap-intron.Tpo -c -o gmap-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gmap-intron.Tpo .deps/gmap-intron.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-maxent.o -MD -MP -MF .deps/gmap-maxent.Tpo -c -o gmap-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gmap-maxent.Tpo .deps/gmap-maxent.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-maxent_hr.o -MD -MP -MF .deps/gmap-maxent_hr.Tpo -c -o gmap-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gmap-maxent_hr.Tpo .deps/gmap-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-pair.o -MD -MP -MF .deps/gmap-pair.Tpo -c -o gmap-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gmap-pair.Tpo .deps/gmap-pair.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-pairpool.o -MD -MP -MF .deps/gmap-pairpool.Tpo -c -o gmap-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gmap-pairpool.Tpo .deps/gmap-pairpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-cellpool.o -MD -MP -MF .deps/gmap-cellpool.Tpo -c -o gmap-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gmap-cellpool.Tpo .deps/gmap-cellpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-stage2.o -MD -MP -MF .deps/gmap-stage2.Tpo -c -o gmap-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gmap-stage2.Tpo .deps/gmap-stage2.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-doublelist.o -MD -MP -MF .deps/gmap-doublelist.Tpo -c -o gmap-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gmap-doublelist.Tpo .deps/gmap-doublelist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-smooth.o -MD -MP -MF .deps/gmap-smooth.Tpo -c -o gmap-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gmap-smooth.Tpo .deps/gmap-smooth.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-splicestringpool.o -MD -MP -MF .deps/gmap-splicestringpool.Tpo -c -o gmap-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gmap-splicestringpool.Tpo .deps/gmap-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-splicetrie_build.o -MD -MP -MF .deps/gmap-splicetrie_build.Tpo -c -o gmap-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gmap-splicetrie_build.Tpo .deps/gmap-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-splicetrie.o -MD -MP -MF .deps/gmap-splicetrie.Tpo -c -o gmap-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gmap-splicetrie.Tpo .deps/gmap-splicetrie.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-boyer-moore.o -MD -MP -MF .deps/gmap-boyer-moore.Tpo -c -o gmap-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gmap-boyer-moore.Tpo .deps/gmap-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-dynprog.o -MD -MP -MF .deps/gmap-dynprog.Tpo -c -o gmap-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gmap-dynprog.Tpo .deps/gmap-dynprog.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-dynprog_simd.o -MD -MP -MF .deps/gmap-dynprog_simd.Tpo -c -o gmap-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gmap-dynprog_simd.Tpo .deps/gmap-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-dynprog_single.o -MD -MP -MF .deps/gmap-dynprog_single.Tpo -c -o gmap-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gmap-dynprog_single.Tpo .deps/gmap-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-dynprog_genome.o -MD -MP -MF .deps/gmap-dynprog_genome.Tpo -c -o gmap-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gmap-dynprog_genome.Tpo .deps/gmap-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-dynprog_cdna.o -MD -MP -MF .deps/gmap-dynprog_cdna.Tpo -c -o gmap-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gmap-dynprog_cdna.Tpo .deps/gmap-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-dynprog_end.o -MD -MP -MF .deps/gmap-dynprog_end.Tpo -c -o gmap-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gmap-dynprog_end.Tpo .deps/gmap-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-translation.o -MD -MP -MF .deps/gmap-translation.Tpo -c -o gmap-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gmap-translation.Tpo .deps/gmap-translation.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-pbinom.o -MD -MP -MF .deps/gmap-pbinom.Tpo -c -o gmap-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gmap-pbinom.Tpo .deps/gmap-pbinom.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-changepoint.o -MD -MP -MF .deps/gmap-changepoint.Tpo -c -o gmap-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gmap-changepoint.Tpo .deps/gmap-changepoint.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-stage3.o -MD -MP -MF .deps/gmap-stage3.Tpo -c -o gmap-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gmap-stage3.Tpo .deps/gmap-stage3.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-request.o -MD -MP -MF .deps/gmap-request.Tpo -c -o gmap-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gmap-request.Tpo .deps/gmap-request.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-result.o -MD -MP -MF .deps/gmap-result.Tpo -c -o gmap-result.o `test -f 'result.c' || echo './'`result.c mv -f .deps/gmap-result.Tpo .deps/gmap-result.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-output.o -MD -MP -MF .deps/gmap-output.Tpo -c -o gmap-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gmap-output.Tpo .deps/gmap-output.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-inbuffer.o -MD -MP -MF .deps/gmap-inbuffer.Tpo -c -o gmap-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gmap-inbuffer.Tpo .deps/gmap-inbuffer.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-samheader.o -MD -MP -MF .deps/gmap-samheader.Tpo -c -o gmap-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gmap-samheader.Tpo .deps/gmap-samheader.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-outbuffer.o -MD -MP -MF .deps/gmap-outbuffer.Tpo -c -o gmap-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gmap-outbuffer.Tpo .deps/gmap-outbuffer.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-chimera.o -MD -MP -MF .deps/gmap-chimera.Tpo -c -o gmap-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gmap-chimera.Tpo .deps/gmap-chimera.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-datadir.o -MD -MP -MF .deps/gmap-datadir.Tpo -c -o gmap-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gmap-datadir.Tpo .deps/gmap-datadir.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-getopt.o -MD -MP -MF .deps/gmap-getopt.Tpo -c -o gmap-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmap-getopt.Tpo .deps/gmap-getopt.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-getopt1.o -MD -MP -MF .deps/gmap-getopt1.Tpo -c -o gmap-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gmap-getopt1.Tpo .deps/gmap-getopt1.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -MT gmap-gmap.o -MD -MP -MF .deps/gmap-gmap.Tpo -c -o gmap-gmap.o `test -f 'gmap.c' || echo './'`gmap.c mv -f .deps/gmap-gmap.Tpo .deps/gmap-gmap.Po /bin/sh ../libtool --tag=CC --mode=link cc -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -o gmap gmap-except.o gmap-assert.o gmap-mem.o gmap-intlist.o gmap-list.o gmap-littleendian.o gmap-bigendian.o gmap-univinterval.o gmap-interval.o gmap-uintlist.o gmap-stopwatch.o gmap-access.o gmap-filestring.o gmap-iit-read-univ.o gmap-iit-read.o gmap-md5.o gmap-bzip2.o gmap-sequence.o gmap-reader.o gmap-genomicpos.o gmap-compress.o gmap-compress-write.o gmap-gbuffer.o gmap-genome.o gmap-popcount.o gmap-genome128_hr.o gmap-genome_sites.o gmap-genome-write.o gmap-bitpack64-read.o gmap-bitpack64-readtwo.o gmap-indexdb.o gmap-indexdb_hr.o gmap-oligo.o gmap-block.o gmap-chrom.o gmap-segmentpos.o gmap-chrnum.o gmap-uinttable.o gmap-gregion.o gmap-match.o gmap-matchpool.o gmap-diagnostic.o gmap-stage1.o gmap-diag.o gmap-diagpool.o gmap-cmet.o gmap-atoi.o gmap-orderstat.o gmap-oligoindex_hr.o gmap-intron.o gmap-maxent.o gmap-maxent_hr.o gmap-pair.o gmap-pairpool.o gmap-cellpool.o gmap-stage2.o gmap-doublelist.o gmap-smooth.o gmap-splicestringpool.o gmap-splicetrie_build.o gmap-splicetrie.o gmap-boyer-moore.o gmap-dynprog.o gmap-dynprog_simd.o gmap-dynprog_single.o gmap-dynprog_genome.o gmap-dynprog_cdna.o gmap-dynprog_end.o gmap-translation.o gmap-pbinom.o gmap-changepoint.o gmap-stage3.o gmap-request.o gmap-result.o gmap-output.o gmap-inbuffer.o gmap-samheader.o gmap-outbuffer.o gmap-chimera.o gmap-datadir.o gmap-getopt.o gmap-getopt1.o gmap-gmap.o -lz -lbz2 -lm libtool: link: cc -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -O2 -pipe -fno-strict-aliasing -o gmap gmap-except.o gmap-assert.o gmap-mem.o gmap-intlist.o gmap-list.o gmap-littleendian.o gmap-bigendian.o gmap-univinterval.o gmap-interval.o gmap-uintlist.o gmap-stopwatch.o gmap-access.o gmap-filestring.o gmap-iit-read-univ.o gmap-iit-read.o gmap-md5.o gmap-bzip2.o gmap-sequence.o gmap-reader.o gmap-genomicpos.o gmap-compress.o gmap-compress-write.o gmap-gbuffer.o gmap-genome.o gmap-popcount.o gmap-genome128_hr.o gmap-genome_sites.o gmap-genome-write.o gmap-bitpack64-read.o gmap-bitpack64-readtwo.o gmap-indexdb.o gmap-indexdb_hr.o gmap-oligo.o gmap-block.o gmap-chrom.o gmap-segmentpos.o gmap-chrnum.o gmap-uinttable.o gmap-gregion.o gmap-match.o gmap-matchpool.o gmap-diagnostic.o gmap-stage1.o gmap-diag.o gmap-diagpool.o gmap-cmet.o gmap-atoi.o gmap-orderstat.o gmap-oligoindex_hr.o gmap-intron.o gmap-maxent.o gmap-maxent_hr.o gmap-pair.o gmap-pairpool.o gmap-cellpool.o gmap-stage2.o gmap-doublelist.o gmap-smooth.o gmap-splicestringpool.o gmap-splicetrie_build.o gmap-splicetrie.o gmap-boyer-moore.o gmap-dynprog.o gmap-dynprog_simd.o gmap-dynprog_single.o gmap-dynprog_genome.o gmap-dynprog_cdna.o gmap-dynprog_end.o gmap-translation.o gmap-pbinom.o gmap-changepoint.o gmap-stage3.o gmap-request.o gmap-result.o gmap-output.o gmap-inbuffer.o gmap-samheader.o gmap-outbuffer.o gmap-chimera.o gmap-datadir.o gmap-getopt.o gmap-getopt1.o gmap-gmap.o -lz -lbz2 -lm -pthread cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-except.o -MD -MP -MF .deps/gmapl-except.Tpo -c -o gmapl-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapl-except.Tpo .deps/gmapl-except.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-assert.o -MD -MP -MF .deps/gmapl-assert.Tpo -c -o gmapl-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmapl-assert.Tpo .deps/gmapl-assert.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-mem.o -MD -MP -MF .deps/gmapl-mem.Tpo -c -o gmapl-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gmapl-mem.Tpo .deps/gmapl-mem.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-intlist.o -MD -MP -MF .deps/gmapl-intlist.Tpo -c -o gmapl-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmapl-intlist.Tpo .deps/gmapl-intlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-list.o -MD -MP -MF .deps/gmapl-list.Tpo -c -o gmapl-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmapl-list.Tpo .deps/gmapl-list.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-littleendian.o -MD -MP -MF .deps/gmapl-littleendian.Tpo -c -o gmapl-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmapl-littleendian.Tpo .deps/gmapl-littleendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-bigendian.o -MD -MP -MF .deps/gmapl-bigendian.Tpo -c -o gmapl-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapl-bigendian.Tpo .deps/gmapl-bigendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-univinterval.o -MD -MP -MF .deps/gmapl-univinterval.Tpo -c -o gmapl-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmapl-univinterval.Tpo .deps/gmapl-univinterval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-interval.o -MD -MP -MF .deps/gmapl-interval.Tpo -c -o gmapl-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapl-interval.Tpo .deps/gmapl-interval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-uintlist.o -MD -MP -MF .deps/gmapl-uintlist.Tpo -c -o gmapl-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmapl-uintlist.Tpo .deps/gmapl-uintlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-stopwatch.o -MD -MP -MF .deps/gmapl-stopwatch.Tpo -c -o gmapl-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmapl-stopwatch.Tpo .deps/gmapl-stopwatch.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-access.o -MD -MP -MF .deps/gmapl-access.Tpo -c -o gmapl-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmapl-access.Tpo .deps/gmapl-access.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-filestring.o -MD -MP -MF .deps/gmapl-filestring.Tpo -c -o gmapl-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmapl-filestring.Tpo .deps/gmapl-filestring.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-iit-read-univ.o -MD -MP -MF .deps/gmapl-iit-read-univ.Tpo -c -o gmapl-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmapl-iit-read-univ.Tpo .deps/gmapl-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-iit-read.o -MD -MP -MF .deps/gmapl-iit-read.Tpo -c -o gmapl-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmapl-iit-read.Tpo .deps/gmapl-iit-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-md5.o -MD -MP -MF .deps/gmapl-md5.Tpo -c -o gmapl-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmapl-md5.Tpo .deps/gmapl-md5.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-bzip2.o -MD -MP -MF .deps/gmapl-bzip2.Tpo -c -o gmapl-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmapl-bzip2.Tpo .deps/gmapl-bzip2.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-sequence.o -MD -MP -MF .deps/gmapl-sequence.Tpo -c -o gmapl-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmapl-sequence.Tpo .deps/gmapl-sequence.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-reader.o -MD -MP -MF .deps/gmapl-reader.Tpo -c -o gmapl-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gmapl-reader.Tpo .deps/gmapl-reader.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-genomicpos.o -MD -MP -MF .deps/gmapl-genomicpos.Tpo -c -o gmapl-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmapl-genomicpos.Tpo .deps/gmapl-genomicpos.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-compress.o -MD -MP -MF .deps/gmapl-compress.Tpo -c -o gmapl-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmapl-compress.Tpo .deps/gmapl-compress.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-compress-write.o -MD -MP -MF .deps/gmapl-compress-write.Tpo -c -o gmapl-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmapl-compress-write.Tpo .deps/gmapl-compress-write.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-gbuffer.o -MD -MP -MF .deps/gmapl-gbuffer.Tpo -c -o gmapl-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gmapl-gbuffer.Tpo .deps/gmapl-gbuffer.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-genome.o -MD -MP -MF .deps/gmapl-genome.Tpo -c -o gmapl-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmapl-genome.Tpo .deps/gmapl-genome.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-popcount.o -MD -MP -MF .deps/gmapl-popcount.Tpo -c -o gmapl-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmapl-popcount.Tpo .deps/gmapl-popcount.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-genome128_hr.o -MD -MP -MF .deps/gmapl-genome128_hr.Tpo -c -o gmapl-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmapl-genome128_hr.Tpo .deps/gmapl-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-genome_sites.o -MD -MP -MF .deps/gmapl-genome_sites.Tpo -c -o gmapl-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gmapl-genome_sites.Tpo .deps/gmapl-genome_sites.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-genome-write.o -MD -MP -MF .deps/gmapl-genome-write.Tpo -c -o gmapl-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c genome-write.c: In function 'genome_writeraw_file': genome-write.c:567: warning: comparison is always true due to limited range of data type mv -f .deps/gmapl-genome-write.Tpo .deps/gmapl-genome-write.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-bitpack64-read.o -MD -MP -MF .deps/gmapl-bitpack64-read.Tpo -c -o gmapl-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmapl-bitpack64-read.Tpo .deps/gmapl-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-bitpack64-readtwo.o -MD -MP -MF .deps/gmapl-bitpack64-readtwo.Tpo -c -o gmapl-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmapl-bitpack64-readtwo.Tpo .deps/gmapl-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-indexdb.o -MD -MP -MF .deps/gmapl-indexdb.Tpo -c -o gmapl-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmapl-indexdb.Tpo .deps/gmapl-indexdb.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-indexdb_hr.o -MD -MP -MF .deps/gmapl-indexdb_hr.Tpo -c -o gmapl-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/gmapl-indexdb_hr.Tpo .deps/gmapl-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-oligo.o -MD -MP -MF .deps/gmapl-oligo.Tpo -c -o gmapl-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gmapl-oligo.Tpo .deps/gmapl-oligo.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-block.o -MD -MP -MF .deps/gmapl-block.Tpo -c -o gmapl-block.o `test -f 'block.c' || echo './'`block.c mv -f .deps/gmapl-block.Tpo .deps/gmapl-block.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-chrom.o -MD -MP -MF .deps/gmapl-chrom.Tpo -c -o gmapl-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmapl-chrom.Tpo .deps/gmapl-chrom.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-segmentpos.o -MD -MP -MF .deps/gmapl-segmentpos.Tpo -c -o gmapl-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gmapl-segmentpos.Tpo .deps/gmapl-segmentpos.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-chrnum.o -MD -MP -MF .deps/gmapl-chrnum.Tpo -c -o gmapl-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gmapl-chrnum.Tpo .deps/gmapl-chrnum.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-uinttable.o -MD -MP -MF .deps/gmapl-uinttable.Tpo -c -o gmapl-uinttable.o `test -f 'uinttable.c' || echo './'`uinttable.c mv -f .deps/gmapl-uinttable.Tpo .deps/gmapl-uinttable.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-gregion.o -MD -MP -MF .deps/gmapl-gregion.Tpo -c -o gmapl-gregion.o `test -f 'gregion.c' || echo './'`gregion.c mv -f .deps/gmapl-gregion.Tpo .deps/gmapl-gregion.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-match.o -MD -MP -MF .deps/gmapl-match.Tpo -c -o gmapl-match.o `test -f 'match.c' || echo './'`match.c mv -f .deps/gmapl-match.Tpo .deps/gmapl-match.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-matchpool.o -MD -MP -MF .deps/gmapl-matchpool.Tpo -c -o gmapl-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c mv -f .deps/gmapl-matchpool.Tpo .deps/gmapl-matchpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-diagnostic.o -MD -MP -MF .deps/gmapl-diagnostic.Tpo -c -o gmapl-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c mv -f .deps/gmapl-diagnostic.Tpo .deps/gmapl-diagnostic.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-stage1.o -MD -MP -MF .deps/gmapl-stage1.Tpo -c -o gmapl-stage1.o `test -f 'stage1.c' || echo './'`stage1.c mv -f .deps/gmapl-stage1.Tpo .deps/gmapl-stage1.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-diag.o -MD -MP -MF .deps/gmapl-diag.Tpo -c -o gmapl-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gmapl-diag.Tpo .deps/gmapl-diag.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-diagpool.o -MD -MP -MF .deps/gmapl-diagpool.Tpo -c -o gmapl-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gmapl-diagpool.Tpo .deps/gmapl-diagpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-cmet.o -MD -MP -MF .deps/gmapl-cmet.Tpo -c -o gmapl-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gmapl-cmet.Tpo .deps/gmapl-cmet.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-atoi.o -MD -MP -MF .deps/gmapl-atoi.Tpo -c -o gmapl-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gmapl-atoi.Tpo .deps/gmapl-atoi.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-orderstat.o -MD -MP -MF .deps/gmapl-orderstat.Tpo -c -o gmapl-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gmapl-orderstat.Tpo .deps/gmapl-orderstat.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-oligoindex_hr.o -MD -MP -MF .deps/gmapl-oligoindex_hr.Tpo -c -o gmapl-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gmapl-oligoindex_hr.Tpo .deps/gmapl-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-intron.o -MD -MP -MF .deps/gmapl-intron.Tpo -c -o gmapl-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gmapl-intron.Tpo .deps/gmapl-intron.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-maxent.o -MD -MP -MF .deps/gmapl-maxent.Tpo -c -o gmapl-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gmapl-maxent.Tpo .deps/gmapl-maxent.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-maxent_hr.o -MD -MP -MF .deps/gmapl-maxent_hr.Tpo -c -o gmapl-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gmapl-maxent_hr.Tpo .deps/gmapl-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-pair.o -MD -MP -MF .deps/gmapl-pair.Tpo -c -o gmapl-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gmapl-pair.Tpo .deps/gmapl-pair.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-pairpool.o -MD -MP -MF .deps/gmapl-pairpool.Tpo -c -o gmapl-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gmapl-pairpool.Tpo .deps/gmapl-pairpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-cellpool.o -MD -MP -MF .deps/gmapl-cellpool.Tpo -c -o gmapl-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gmapl-cellpool.Tpo .deps/gmapl-cellpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-stage2.o -MD -MP -MF .deps/gmapl-stage2.Tpo -c -o gmapl-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gmapl-stage2.Tpo .deps/gmapl-stage2.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-doublelist.o -MD -MP -MF .deps/gmapl-doublelist.Tpo -c -o gmapl-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gmapl-doublelist.Tpo .deps/gmapl-doublelist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-smooth.o -MD -MP -MF .deps/gmapl-smooth.Tpo -c -o gmapl-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gmapl-smooth.Tpo .deps/gmapl-smooth.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-splicestringpool.o -MD -MP -MF .deps/gmapl-splicestringpool.Tpo -c -o gmapl-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gmapl-splicestringpool.Tpo .deps/gmapl-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-splicetrie_build.o -MD -MP -MF .deps/gmapl-splicetrie_build.Tpo -c -o gmapl-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gmapl-splicetrie_build.Tpo .deps/gmapl-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-splicetrie.o -MD -MP -MF .deps/gmapl-splicetrie.Tpo -c -o gmapl-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gmapl-splicetrie.Tpo .deps/gmapl-splicetrie.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-boyer-moore.o -MD -MP -MF .deps/gmapl-boyer-moore.Tpo -c -o gmapl-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gmapl-boyer-moore.Tpo .deps/gmapl-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-dynprog.o -MD -MP -MF .deps/gmapl-dynprog.Tpo -c -o gmapl-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gmapl-dynprog.Tpo .deps/gmapl-dynprog.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-dynprog_simd.o -MD -MP -MF .deps/gmapl-dynprog_simd.Tpo -c -o gmapl-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gmapl-dynprog_simd.Tpo .deps/gmapl-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-dynprog_single.o -MD -MP -MF .deps/gmapl-dynprog_single.Tpo -c -o gmapl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gmapl-dynprog_single.Tpo .deps/gmapl-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-dynprog_genome.o -MD -MP -MF .deps/gmapl-dynprog_genome.Tpo -c -o gmapl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gmapl-dynprog_genome.Tpo .deps/gmapl-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-dynprog_cdna.o -MD -MP -MF .deps/gmapl-dynprog_cdna.Tpo -c -o gmapl-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gmapl-dynprog_cdna.Tpo .deps/gmapl-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-dynprog_end.o -MD -MP -MF .deps/gmapl-dynprog_end.Tpo -c -o gmapl-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gmapl-dynprog_end.Tpo .deps/gmapl-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-translation.o -MD -MP -MF .deps/gmapl-translation.Tpo -c -o gmapl-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gmapl-translation.Tpo .deps/gmapl-translation.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-pbinom.o -MD -MP -MF .deps/gmapl-pbinom.Tpo -c -o gmapl-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gmapl-pbinom.Tpo .deps/gmapl-pbinom.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-changepoint.o -MD -MP -MF .deps/gmapl-changepoint.Tpo -c -o gmapl-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gmapl-changepoint.Tpo .deps/gmapl-changepoint.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-stage3.o -MD -MP -MF .deps/gmapl-stage3.Tpo -c -o gmapl-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gmapl-stage3.Tpo .deps/gmapl-stage3.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-request.o -MD -MP -MF .deps/gmapl-request.Tpo -c -o gmapl-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gmapl-request.Tpo .deps/gmapl-request.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-result.o -MD -MP -MF .deps/gmapl-result.Tpo -c -o gmapl-result.o `test -f 'result.c' || echo './'`result.c mv -f .deps/gmapl-result.Tpo .deps/gmapl-result.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-output.o -MD -MP -MF .deps/gmapl-output.Tpo -c -o gmapl-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gmapl-output.Tpo .deps/gmapl-output.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-inbuffer.o -MD -MP -MF .deps/gmapl-inbuffer.Tpo -c -o gmapl-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gmapl-inbuffer.Tpo .deps/gmapl-inbuffer.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-samheader.o -MD -MP -MF .deps/gmapl-samheader.Tpo -c -o gmapl-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gmapl-samheader.Tpo .deps/gmapl-samheader.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-outbuffer.o -MD -MP -MF .deps/gmapl-outbuffer.Tpo -c -o gmapl-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gmapl-outbuffer.Tpo .deps/gmapl-outbuffer.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-chimera.o -MD -MP -MF .deps/gmapl-chimera.Tpo -c -o gmapl-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gmapl-chimera.Tpo .deps/gmapl-chimera.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-datadir.o -MD -MP -MF .deps/gmapl-datadir.Tpo -c -o gmapl-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gmapl-datadir.Tpo .deps/gmapl-datadir.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-getopt.o -MD -MP -MF .deps/gmapl-getopt.Tpo -c -o gmapl-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmapl-getopt.Tpo .deps/gmapl-getopt.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-getopt1.o -MD -MP -MF .deps/gmapl-getopt1.Tpo -c -o gmapl-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gmapl-getopt1.Tpo .deps/gmapl-getopt1.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -MT gmapl-gmap.o -MD -MP -MF .deps/gmapl-gmap.Tpo -c -o gmapl-gmap.o `test -f 'gmap.c' || echo './'`gmap.c mv -f .deps/gmapl-gmap.Tpo .deps/gmapl-gmap.Po /bin/sh ../libtool --tag=CC --mode=link cc -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o gmapl-intlist.o gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o gmapl-diagpool.o gmapl-cmet.o gmapl-atoi.o gmapl-orderstat.o gmapl-oligoindex_hr.o gmapl-intron.o gmapl-maxent.o gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o gmapl-cellpool.o gmapl-stage2.o gmapl-doublelist.o gmapl-smooth.o gmapl-splicestringpool.o gmapl-splicetrie_build.o gmapl-splicetrie.o gmapl-boyer-moore.o gmapl-dynprog.o gmapl-dynprog_simd.o gmapl-dynprog_single.o gmapl-dynprog_genome.o gmapl-dynprog_cdna.o gmapl-dynprog_end.o gmapl-translation.o gmapl-pbinom.o gmapl-changepoint.o gmapl-stage3.o gmapl-request.o gmapl-result.o gmapl-output.o gmapl-inbuffer.o gmapl-samheader.o gmapl-outbuffer.o gmapl-chimera.o gmapl-datadir.o gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o -lz -lbz2 -lm libtool: link: cc -D_THREAD_SAFE -pthread -DTARGET=\"powerpc64-portbld-freebsd13.0\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -fno-strict-aliasing -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o gmapl-intlist.o gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o gmapl-diagpool.o gmapl-cmet.o gmapl-atoi.o gmapl-orderstat.o gmapl-oligoindex_hr.o gmapl-intron.o gmapl-maxent.o gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o gmapl-cellpool.o gmapl-stage2.o gmapl-doublelist.o gmapl-smooth.o gmapl-splicestringpool.o gmapl-splicetrie_build.o gmapl-splicetrie.o gmapl-boyer-moore.o gmapl-dynprog.o gmapl-dynprog_simd.o gmapl-dynprog_single.o gmapl-dynprog_genome.o gmapl-dynprog_cdna.o gmapl-dynprog_end.o gmapl-translation.o gmapl-pbinom.o gmapl-changepoint.o gmapl-stage3.o gmapl-request.o gmapl-result.o gmapl-output.o gmapl-inbuffer.o gmapl-samheader.o gmapl-outbuffer.o gmapl-chimera.o gmapl-datadir.o gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o -lz -lbz2 -lm -pthread cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/get_genome-except.Tpo .deps/get_genome-except.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/get_genome-assert.Tpo .deps/get_genome-assert.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/get_genome-mem.Tpo .deps/get_genome-mem.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/get_genome-intlist.Tpo .deps/get_genome-intlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/get_genome-list.Tpo .deps/get_genome-list.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/get_genome-littleendian.Tpo .deps/get_genome-littleendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/get_genome-bigendian.Tpo .deps/get_genome-bigendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/get_genome-univinterval.Tpo .deps/get_genome-univinterval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/get_genome-interval.Tpo .deps/get_genome-interval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/get_genome-uintlist.Tpo .deps/get_genome-uintlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/get_genome-stopwatch.Tpo .deps/get_genome-stopwatch.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/get_genome-access.Tpo .deps/get_genome-access.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/get_genome-filestring.Tpo .deps/get_genome-filestring.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/get_genome-iit-read-univ.Tpo .deps/get_genome-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/get_genome-iit-read.Tpo .deps/get_genome-iit-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/get_genome-md5.Tpo .deps/get_genome-md5.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/get_genome-bzip2.Tpo .deps/get_genome-bzip2.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/get_genome-sequence.Tpo .deps/get_genome-sequence.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/get_genome-genome.Tpo .deps/get_genome-genome.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/get_genome-genomicpos.Tpo .deps/get_genome-genomicpos.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/get_genome-chrom.Tpo .deps/get_genome-chrom.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/get_genome-chrnum.Tpo .deps/get_genome-chrnum.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/get_genome-datadir.Tpo .deps/get_genome-datadir.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/get_genome-parserange.Tpo .deps/get_genome-parserange.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/get_genome-getopt.Tpo .deps/get_genome-getopt.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/get_genome-getopt1.Tpo .deps/get_genome-getopt1.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c mv -f .deps/get_genome-get-genome.Tpo .deps/get_genome-get-genome.Po /bin/sh ../libtool --tag=CC --mode=link cc -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm libtool: link: cc -D_THREAD_SAFE -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm -pthread cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapindex-except.Tpo .deps/gmapindex-except.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmapindex-assert.Tpo .deps/gmapindex-assert.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gmapindex-mem.Tpo .deps/gmapindex-mem.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmapindex-intlist.Tpo .deps/gmapindex-intlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-list.o -MD -MP -MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmapindex-list.Tpo .deps/gmapindex-list.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-littleendian.o -MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmapindex-littleendian.Tpo .deps/gmapindex-littleendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-bigendian.o -MD -MP -MF .deps/gmapindex-bigendian.Tpo -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapindex-bigendian.Tpo .deps/gmapindex-bigendian.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmapindex-univinterval.Tpo .deps/gmapindex-univinterval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapindex-interval.Tpo .deps/gmapindex-interval.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmapindex-uintlist.Tpo .deps/gmapindex-uintlist.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmapindex-stopwatch.Tpo .deps/gmapindex-stopwatch.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmapindex-access.Tpo .deps/gmapindex-access.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmapindex-filestring.Tpo .deps/gmapindex-filestring.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmapindex-iit-read-univ.Tpo .deps/gmapindex-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c mv -f .deps/gmapindex-iit-write-univ.Tpo .deps/gmapindex-iit-write-univ.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmapindex-iit-read.Tpo .deps/gmapindex-iit-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmapindex-md5.Tpo .deps/gmapindex-md5.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmapindex-bzip2.Tpo .deps/gmapindex-bzip2.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmapindex-sequence.Tpo .deps/gmapindex-sequence.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmapindex-genome.Tpo .deps/gmapindex-genome.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmapindex-genomicpos.Tpo .deps/gmapindex-genomicpos.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmapindex-compress-write.Tpo .deps/gmapindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c genome-write.c: In function 'genome_writeraw_file': genome-write.c:567: warning: comparison is always true due to limited range of data type mv -f .deps/gmapindex-genome-write.Tpo .deps/gmapindex-genome-write.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmapindex-compress.Tpo .deps/gmapindex-compress.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmapindex-popcount.Tpo .deps/gmapindex-popcount.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmapindex-genome128_hr.Tpo .deps/gmapindex-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmapindex-bitpack64-read.Tpo .deps/gmapindex-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmapindex-bitpack64-readtwo.Tpo .deps/gmapindex-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gmapindex-bitpack64-access.Tpo .deps/gmapindex-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -D_THREAD_SAFE -pthread -DUTILITYP=1 -O2 -pipe -fno-strict-aliasing -MT gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c {standard input}: Assembler messages: {standard input}:2591: Error: Unrecognized opcode: `bsr' {standard input}:2629: Error: Unrecognized opcode: `bsr' {standard input}:2727: Error: Unrecognized opcode: `bsr' {standard input}:2760: Error: Unrecognized opcode: `bsr' gmake[3]: *** [Makefile:5132: gmapindex-bitpack64-write.o] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src' gmake[2]: *** [Makefile:1195: all] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src' gmake[1]: *** [Makefile:315: all-recursive] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21' *** Error code 1 Stop. make: stopped in /usr/ports/biology/gmap =>> Cleaning up wrkdir ===> Cleaning for gmap-2015.09.21 build of biology/gmap | gmap-2015.09.21 ended at Fri Apr 12 02:35:13 UTC 2019 build time: 00:28:38 !!! build failure encountered !!!